Genetics-Genomics-Knowledge

Thursday, 12 December 2013

Cancer genome-sequencing study design

http://www.nature.com/nrg/journal/v14/n5/full/nrg3445.html
FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data

http://bioinformatics.oxfordjournals.org/content/early/2013/04/24/bioinformatics.btt151.short?rss=1&buffer_share=c5ca4&utm_source=bu...
Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas : Nature Genetics : Nature Publishing Group

http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.2611.html
RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

http://arxiv.org/abs/1402.0850
From FastQ Data to High-Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline - Current Protocols in Bioinformatics - Auwera - Wiley Online Library

http://onlinelibrary.wiley.com/doi/10.1002/0471250953.bi1110s43/abstract;jsessionid=FF13D61431F1B7A0666A3D6C0B4173E1.f03t01
eXtasy: Variant Prioritization

http://homes.esat.kuleuven.be/~bioiuser/eXtasy/?utm_source=twitterfeed&utm_medium=twitter
Genome Biology | Abstract | Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

http://genomebiology.com/2013/14/7/R70/abstract
WEB TOOL Sequence Coverage

http://seqcoverage.com/
Best SED tutorial for ever

http://www.grymoire.com/Unix/Sed.html
fastq-tools

I am browsing [fastq-tools]. Have a look at it! http://homes.cs.washington.edu/~dcjones/fastq-tools/?utm_content=buffer7e4f0&utm_medium=...

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