PARADIGM-SHIFT pathway based functional mutation identification in cancer

http://m.bioinformatics.oxfordjournals.org/content/28/18/i640

Functional annotation of noncoding sequence variants : Nature Methods : Nature Publishing Group

http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.2832.html

SplicePlot: a tool for visualizing alternative splicing -- splice_plot 1.0 documentation

http://montgomerylab.stanford.edu/spliceplot/

Genome Biology | Abstract | Using high-density DNA methylation arrays to profile copy number alterations

http://genomebiology.com/2014/15/2/R30/abstract

JAMA Network | From Genome-Wide Association Studies to Next-Generation Sequencing: Lessons From the Past and Planning for the Future

http://archneur.jamanetwork.com/article.aspx?articleid=1763963

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

http://arxiv.org/abs/1402.0850

PLOS Genetics: Single Cell Genomics: Advances and Future Perspectives

http://www.plosgenetics.org/article/info:doi%2F10.1371%2Fjournal.pgen.1004126

From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing

http://m.genome.cshlp.org/content/early/2014/01/30/gr.161034.113.abstract

A general framework for estimating the relative pathogenicity of human genetic variants : Nature Genetics : Nature Publishing Group

http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.2892.html

BMC Bioinformatics | Abstract | Inferring clonal evolution of tumors from single nucleotide somatic mutations

http://www.biomedcentral.com/1471-2105/15/35/abstract